Alchemist based biochemical simulator with multiple mobile compartments
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In this thesis, the goal is to explore the suitability of Alchemist as a biochemical simulator. A mapping for each concept in biology to the Alchemist model will be needed in order to provide the widest set of features a stochastic simulator ever had. Moreover, some improvements will be needed to ease and improve the chemistry incarnation of Alchemist. After that, many lines can be explored:
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