Publications  /  2006–2021  /  Sara Montagna

Articles in Journal
2021
Angelo Croatti, Sara Montagna, Carolina Lombardi, Gianfranco Parati, Martino F. Pengo, Alessandro Silvani
An Internet of Medical Things system to increase continuous positive airway pressure usage in patients with sleep disordered breathing
SN Computer Science 2(117), 2021
Alessandro Ricci, Angelo Croatti, Sara Montagna
Pervasive and Connected Digital Twins - A Vision for Digital Health
IEEE Internet Computing, 2021
Sara Montagna, Stefano Mariani, Emiliano Gamberini
Augmenting BDI Agency with a Cognitive Service: Architecture and Validation in Healthcare Domain
Journal of Medical Systems 45(12), 2021
(3 articles in journal in 2021)
2020
Sara Montagna, Michele Braccini, Andrea Roli
The Impact of Self-loops on Boolean Networks Attractor Landscape and Implications for Cell Differentiation Modelling
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2020
Sara Montagna, Angelo Croatti, Alessandro Ricci, Vanni Agnoletti, Vittorio Albarello, Emiliano Gamberini
Real-time tracking and documentation in trauma management
Health Informatics Journal 26(1), 2020
Sara Montagna, Stefano Mariani, Emiliano Gamberini, Alessandro Ricci, Franco Zambonelli
Complementing Agents with Cognitive Services: A Case Study in Healthcare
Journal of Medical Systems 44, September 2020
(3 articles in journal in 2020)
2019
Angelo Croatti, Sara Montagna, Alessandro Ricci, Emiliano Gamberini, Vittorio Albarello, Vanni Agnoletti
BDI Personal Medical Assistant Agents: The Case of Trauma Tracking and Alerting
Artificial Intelligence in Medicine 96, May 2019
(1 article in journal in 2019)
2017
Sara Montagna, Andrea Omicini
Agent-based Modelling for the Self-Management of Chronic Diseases: An Exploratory Study
Simulation: Transactions of the Society for Modeling and Simulation International 93(9), September 2017
(1 article in journal in 2017)
2016
Maura Cárdenas-García, Pedro Pablo González-Pérez, Sara Montagna, Oscar Sánchez Cortés, Elena Hernández Caballero
Modeling intercellular communication as a survival strategy of cancer cells: An in-silico approach on a flexible bioinformatics framework
Bioinformatics and Biology Insights 10, March 2016
Simon Dobson, Mirko Viroli, Jose Luis Fernandez-Marquez, Franco Zambonelli, Graeme Stevenson, Giovanna Di Marzo Serugendo, Sara Montagna, Danilo Pianini, Juan Ye, Gabriella Castelli, Alberto Rosi
Spatial awareness in pervasive ecosystems
The Knowledge Engineering Review 31(4), September 2016
(2 articles in journal in 2016)
2015
Sara Montagna, Mirko Viroli, Andrea Roli
A framework supporting multi-compartment stochastic simulation and parameter optimisation for investigating biological system development
Simulation: Transactions of the Society for Modeling and Simulation International 91(7), June 2015
Mirko Viroli, Danilo Pianini, Sara Montagna, Graeme Stevenson, Franco Zambonelli
A coordination model of pervasive service ecosystems
Science of Computer Programming 110, 2015
Franco Zambonelli, Andrea Omicini, Bernhard Anzengruber, Gabriella Castelli, Francesco L. DeAngelis, Giovanna Di Marzo Serugendo, Simon Dobson, José Luis Fernandez-Marquez, Alois Ferscha, Marco Mamei, Stefano Mariani, Ambra Molesini, Sara Montagna, Jussi Nieminen, Danilo Pianini, Matteo Risoldi, Alberto Rosi, Graeme Stevenson, Mirko Viroli, Juan Ye
Developing Pervasive Multi-Agent Systems with Nature-Inspired Coordination
Pervasive and Mobile Computing 17-B, February 2015
(3 articles in journal in 2015)
2013
Danilo Pianini, Sara Montagna, Mirko Viroli
Chemical-oriented Simulation of Computational Systems with ALCHEMIST
Journal of Simulation, 2013
Pedro Pablo González-Pérez, Maura Cárdenas-García, Sara Montagna
Understanding the PI3K/AKT Anti-Apoptotic Signalling Pathway: a Tuple Space-Based Computational Framework for Simulating the Signal Transduction
Journal of Computations & Modelling 3(2), 2013
Sara Montagna, Mirko Viroli, Jose Luis Fernandez-Marquez, Giovanna Di Marzo Serugendo, Franco Zambonelli
Injecting Self-organisation into Pervasive Service Ecosystems
Mobile Networks and Applications 18(3), 2013
Jose Luis Fernandez-Marquez, Giovanna Di Marzo Serugendo, Sara Montagna, Mirko Viroli, Josep Lluis Arcos
Description and composition of bio-inspired design patterns: a complete overview
Natural Computing 12(1), 2013
(4 articles in journal in 2013)
2012
Maura Cárdenas-García, Pedro Pablo González-Pérez, Sara Montagna
Simulation of caspases apoptotic signalling pathway in a tuple space-based bioinformatics infrastructure
EMBnet.journal 18(B), 2012
(1 article in journal in 2012)
2011
Mirko Viroli, Matteo Casadei, Sara Montagna, Franco Zambonelli
Spatial Coordination of Pervasive Services through Chemical-inspired Tuple Spaces
ACM Transactions on Autonomous and Adaptive Systems 6(2), June 2011
(1 article in journal in 2011)
2008
Sara Montagna, Alessandro Ricci, Andrea Omicini
A&A for Modelling and Engineering Simulations in Systems Biology
International Journal of Agent-Oriented Software Engineering 2(2), 2008
(1 article in journal in 2008)
(20 articles in journal from 2006 to 2021)  [top]  [bottom]
Papers in Proceedings
2019
Michele Braccini, Sara Montagna, Andrea Roli
Self-loops Favour Diversification and Asymmetric Transitions Between Attractors in Boolean Network Models
Artificial Life and Evolutionary Computation, 2019
Sara Montagna, Angelo Croatti, Alessandro Ricci, Vanni Agnoletti, Vittorio Albarello
Pervasive Tracking for Time-Dependent Acute Patient Flow: A Case Study in Trauma Management
CBMS 2019, June 2019
Michele Braccini, Andrea Roli, Marco Villani, Sara Montagna, Roberto Serra
A simplified model of chromatin dynamics drives differentiation process in Boolean models of GRN
The 2019 Conference on Artificial Life, 2019
(3 papers in proceedings in 2019)
2018
Sara Montagna, Michele Braccini, Andrea Roli
The Impact of Self-loops in Random Boolean Network Dynamics: A Simulation Analysis
Artificial Life and Evolutionary Computation, 2018
(1 paper in proceedings in 2018)
2017
Sara Montagna, Pedro H. Abreu, Sylvain Giroux, Michael I. Schumacher
Preface
A2HC 2017. Lecture Notes in Computer Science 10685, 2017
Angelo Croatti, Sara Montagna, Alessandro Ricci
A Personal Medical Digital Assistant Agent for Supporting Human Operators in Emergency Scenarios
A2HC 2017. Lecture Notes in Computer Science 10685, 2017
Angelo Croatti, Sara Montagna, Alessandro Ricci
A Personal Medical Digital Assistant Agent for Supporting Human Operators in Emergency Scenarios
A2HC 2017. Lecture Notes in Computer Science 10643, 2017
Sara Montagna, Michele Braccini, Andrea Roli
The impact of self-loops in random boolean network dynamics
WIVACE 2017 – Book of Abstracts, September 2017
(4 papers in proceedings in 2017)
2016
Sara Montagna, Andrea Omicini, Danilo Pianini
Extending the Gillespie's Stochastic Simulation Algorithm for Integrating Discrete-Event and Multi-Agent Based Simulation
MABS 2015. Lecture Notes in Computer Science 9568, 15 March 2016
Sara Montagna, Andrea Omicini, Francesco Degli Angeli, Michele Donati
Towards the Adoption of Agent-Based Modelling and Simulation in Mobile Health Systems for the Self-Management of Chronic Diseases
WOA 2016. CEUR Workshop Proceedings 1664, 29-30 July 2016
(2 papers in proceedings in 2016)
2015
Sara Montagna, Andrea Omicini, Danilo Pianini
Extending the Gillespie's Stochastic Simulation Algorithm for Integrating Discrete-Event and Multi-Agent Based Simulation
MABS 2015, May 2015
Sara Montagna, Andrea Omicini, Danilo Pianini
A Gillespie-based Computational Model for Integrating Event-driven and Multi-Agent Based Simulation
AAMAS 2015, 4-8 May 2015
(2 papers in proceedings in 2015)
2013
Graeme Stevenson, Juan Ye, Simon Dobson, Danilo Pianini, Sara Montagna, Mirko Viroli
Combining self-organisation, context-awareness and semantic reasoning: the case of resource discovery in opportunistic networks
CM @ SAC 2013, March 2013
Graeme Stevenson, Juan Ye, Simon Dobson, Mirko Viroli, Sara Montagna
Self-Organising Semantic Resource Discovery for Pervasive Systems
Self-Adaptive and Self-Organizing Systems Workshops (SASOW), April 2013
Sara Montagna, Mirko Viroli
Composing Gradients for a Context-Aware Navigation of Users in a Smart-City
SCW 2013, 6 May 2013
Graeme Stevenson, Jose Luis Fernandez-Marquez, Sara Montagna, Alberto Rosi, Juan Ye, Akla Tchao, Simon Dobson, Giovanna Di Marzo Serugendo, Mirko Viroli
Self-Organising Semantic Resource Discovery for Pervasive Systems
ASENSIS 2012, April 2013
(4 papers in proceedings in 2013)
2012
Sara Montagna, Danilo Pianini, Mirko Viroli
A Model for Drosophila Melanogaster Development from a Single Cell to Stripe Pattern Formation
SAC 2012, 26-30 March 2012
José Luis Fernandez-Marquez, Sara Montagna, Andrea Omicini, Franco Zambonelli
ASENSIS 2012 - First International Workshop on Adaptive Service Ecosystems: Nature and Socially Inspired Solutions
SASO 2012, 2012
Graeme Stevenson, Mirko Viroli, Juan Ye, Sara Montagna, Simon Dobson
Self-organising Semantic Resource Discovery for Pervasive Systems
ASENSIS 2012, 10 September 2012
Sara Montagna, Danilo Pianini, Mirko Viroli
Gradient-based Self-organisation Patterns of Anticipative Adaptation
Proceedings of 6th IEEE International Conference on Self-Adaptive and Self-Organizing Systems (SASO 2012), May 2012
Mirko Viroli, Danilo Pianini, Sara Montagna, Graeme Stevenson
Pervasive Ecosystems: a Coordination Model based on Semantic Chemistry
27th Annual ACM Symposium on Applied Computing (SAC 2012) , 26-30 March 2012
Jose Luis Fernandez-Marquez, Giovanna Di Marzo Serugendo, Sara Montagna
BIO-CORE: Bio-inspired Self-organising Mechanisms Core
Bio-Inspired Models of Networks, Information, and Computing Systems. Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering 103, 2012
Sara Montagna, Mirko Viroli, Danilo Pianini, Jose Luis Fernandez-Marquez
Towards a comprehensive approach to spontaneous self-composition in pervasive ecosystems
Proceedings of the 13th Workshop on Objects and Agents, 12 September 2012
(7 papers in proceedings in 2012)
2011
Franco Zambonelli, Gabriella Castelli, Laura Ferrari, Marco Mamei, Alberto Rosi, Giovanna Di Marzo Serugendo, Matteo Risoldi, Akla-Esso Tchao, Simon Dobson, Graeme Stevenson, Yuan Ye, Elena Nardini, Andrea Omicini, Sara Montagna, Mirko Viroli, Alois Ferscha, Sascha Maschek, Bernhard Wally
Self-aware Pervasive Service Ecosystems
Proceedings of the 2nd European Future Technologies Conference and Exhibition 2011 (FET 11). Procedia Computer Science 7, 4-6 May 2011
Sara Montagna, Mirko Viroli, Matteo Risoldi, Danilo Pianini, Giovanna Di Marzo Serugendo
Self-organising Pervasive Ecosystems: A Crowd Evacuation Example
Proceedings of the 3rd International Workshop on Software Engineering for Resilient Systems. Lecture Notes in Computer Science 6968, 29-30 September 2011
Danilo Pianini, Mirko Viroli, Sara Montagna
A Simulation Framework for Pervasive Services Ecosystems
WOA 2011. CEUR Workshop Proceedings 741, 4-6 July 2011
Jose Luis Fernandez-Marquez, Josep Lluis Arcos, Giovanna Di Marzo Serugendo, Mirko Viroli, Sara Montagna
Description and Composition of Bio-Inspired Design Patterns: the Gradient Case
Proceedings of the 3rd Workshop on Bio-Inspired and Self-* Algorithms for Distributed Systems, 14 June 2011
Danilo Pianini, Sara Montagna, Mirko Viroli
A Chemical Inspired Simulation Framework for Pervasive Services Ecosystems
Proceedings of the Federated Conference on Computer Science and Information Systems (FedCSIS 2011), 18-21 September 2011
(5 papers in proceedings in 2011)
2010
Sara Montagna, Nicola Donati, Andrea Omicini
An Agent-based Model for the Pattern Formation in Drosophila Melanogaster
Artificial Life XII, 19-23 August 2010
Sara Montagna, Mirko Viroli
A Framework for Modelling and Simulating Networks of Cells
Proceedings of the 1st International Workshop on Interactions between Computer Science and Biology (CS2Bio'10) . Electronic Notes in Theoretical Computer Science Volume 268, 21 December 2010
Sara Montagna, Andrea Omicini, Alessandro Ricci
A Multiscale Agent-based Model of Morphogenesis in Biological Systems 
WOA 2010. CEUR Workshop Proceedings 621, 5-7 September 2010
(3 papers in proceedings in 2010)
2009
Mirko Viroli, Franco Zambonelli, Matteo Casadei, Sara Montagna
A Biochemical Metaphor for Developing Eternally Adaptive Service Ecosystems
24th Annual ACM Symposium on Applied Computing (SAC 2009), March, 8-12 2009
Carlos Castro Gonzalez, Miguel Angel Luengo-Oroz, Sophie Desnoulez, Louise Duloquin, Laura Fernández-de-Manuel, Sara Montagna, Maria J. Ledesma-Carbayo, Paul Bourgine, Nadine Peyrieras, Andres Santos
An Automatic Quantification and Registration Strategy to Create a Gene Expression Atlas of Zebrafish Embryogenesis
31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2009), 2-6 September 2009
Sara Montagna, Andrea Roli
Parameter tuning of a stochastic biological simulator by metaheuristics
AI*IA 2009: Emergent Perspectives in Artificial Intelligence  XIth International Conference of the Italian Association for Artificial Intelligence Reggio Emilia, Italy, December 9-12, 2009 Proceedings. Lecture Notes in Computer Science 5883, 2009
Sara Montagna, Mirko Viroli
A computational framework for modelling multicellular biochemistry
2009 IEEE Congress on Evolutionary Computation (CEC 2009), 18-21 May 2009
(4 papers in proceedings in 2009)
2008
Sara Montagna, Andrea Omicini, Marco Alberti
Lineage Commitment of Hematopoietic Stem Cells: An Agent-based Model
Intelligenza Artificiale e Scienze della Vita, September 2008
(1 paper in proceedings in 2008)
2007
Sara Montagna, Andrea Omicini, Alessandro Ricci, Mark d'Inverno
Modelling Hematopoietic Stem Cell Behaviour: An Approach Based on Multi-Agent Systems
2nd Conference "Foundations of Systems Biology in Engineering" (FOSBE 2007), 9-12 September 2007
(1 paper in proceedings in 2007)
2006
Sara Montagna, Alessandro Ricci, Andrea Omicini
Agents & Artifacts for Systems Biology: Toward a Framework based on TuCSoN
Industrial Simulation Conference 2006 (ISC 2006), 5-7 June 2006
(1 paper in proceedings in 2006)
(38 papers in proceedings from 2006 to 2021)  [top]  [bottom]
Book Chapters
2020
Sara Montagna, Andrea Omicini
Agent-based Modelling in Multicellular Systems Biology
Data Analytics in Medicine: Concepts, Methodologies, Tools, and Applications, 2020
(1 book chapter in 2020)
2017
Sara Montagna, Andrea Omicini
Agent-based Modelling in Multicellular Systems Biology
Multi-Agent Based Simulations Applied to Biological and Environmental Systems. Advances in Computational Intelligence and Robotics (ACIR), February 2017
(1 book chapter in 2017)
2012
Sara Montagna, Mirko Viroli
A Computational Framework for Multilevel Morphologies
Morphogenetic Engineering. Understanding Complex Systems, 2012
(1 book chapter in 2012)
2009
Mark d'Inverno, Paul Howells, Sara Montagna, Ingo Roeder, Rob Saunders
Agent-based Modelling of Stem Cells
Multi-Agent Systems: Simulation and Applications. Computational Analysis, Synthesis, and Design of Dynamic Systems, June 2009
(1 book chapter in 2009)
(4 book chapters from 2006 to 2021)  [top]  [bottom]
Edited Volumes
2017
Sara Montagna, Pedro Henriques Abreu, Sylvain Giroux, Michael Schumacher (eds.)
Agents and Multi-Agent Systems for Health Care
A2HC 2017. Lecture Notes in Computer Science 10685, 2017
(1 edited volume in 2017)
2012
José Luis Fernandez-Marquez, Sara Montagna, Andrea Omicini, Franco Zambonelli (eds.)
1st International Workshop on Adaptive Service Ecosystems: Natural and Socially Inspired Solutions (ASENSIS 2012)
ASENSIS 2012, 10 September 2012
(1 edited volume in 2012)
(2 edited volumes from 2006 to 2021)  [top]  [bottom]
PhD Theses
2011
Sara Montagna
Multi-level models and infrastructures for simulating biological system development
(1 phd thesis in 2011)
(1 phd thesis from 2006 to 2021)  [top]  [bottom]
(65 publications from 2006 to 2021)

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