Wiki source code of MS-BioNET

Last modified by Andrea Omicini on 07/10/2020 22:28

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1 1 MS-BioNET Home
3 MS-BioNet (MultiScale-Biochemical NETwork) is a computational framework for modelling and simulating large networks of compartments hosting a chemical solution and communicating through an enhanced model of chemical reaction addressing molecule transfer.
5 The framework provides:
6 * a logic-oriented specification language that is used to flexibly specify simulation scenarios providing constructs to directly express biochemical reactions, compartments, compartment link topology, and reactions involving selective transfer through membranes
7 * a simulation engine to perform stochastic simulation using the Gillespie's SSA
8 * a module for parameter optimisation
10 *Contact*: [Sara Montagna|SaraMontagna.WebHome]
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